C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein, transmembrane 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117177 Rnft2-001 ENSMUSG00000032850 10090 - 5:118190736-118244861 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastKidneyLiverLungMuscleOvaryTestisENSMUST00000117177
Transcript ID Adipose Adrenal Breast Kidney Liver Lung Muscle Ovary Testis
ENSMUST00000117177 0.457±0.00 0.858±0.14 0.446±0.23 0.272±0.11 0.041±0.02 0.138±0.00 0.440±0.00 0.783±0.35 0.526±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YS CIL_0004YS_0002 CGP 5:118190736-118266093

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000074979 rnft2-201 protein_coding Danio_rerio 0 305
ENST00000257575 RNFT2-001 protein_coding Homo_sapiens 0 1611
ENST00000319176 RNFT2-004 protein_coding Homo_sapiens 0 787
ENST00000392549 RNFT2-201 protein_coding Homo_sapiens 0 1611
ENST00000407967 RNFT2-002 protein_coding Homo_sapiens 0 1430
ENST00000547718 RNFT2-003 nonsense_mediated_decay Homo_sapiens 0 1282
ENST00000622220 RNFT2-202 protein_coding Homo_sapiens 0 787

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