C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ring finger protein, transmembrane 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000032850 Rnft2 10090 - 5:118190736-118245116 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000117177 Rnft2-001 118190736-118244861 protein_coding
  ENSMUST00000121369 Rnft2-002 118190742-118245116 protein_coding
  ENSMUST00000132831 Rnft2-007 118194054-118201232 protein_coding
  ENSMUST00000133372 Rnft2-003 118237505-118244992 protein_coding
  ENSMUST00000134281 Rnft2-006 118193572-118229145 retained_intron
  ENSMUST00000144213 Rnft2-005 118236927-118242921 retained_intron
  ENSMUST00000154786 Rnft2-004 118234156-118244994 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117177ENSMUST00000121369ENSMUST00000132831ENSMUST00000133372ENSMUST00000134281ENSMUST00000144213ENSMUST00000154786
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117177 0.457±0.00 0.858±0.14 N/A N/A 0.446±0.23 N/A N/A 0.272±0.11 0.041±0.02 0.138±0.00 0.440±0.00 0.783±0.35 N/A 0.526±0.00
ENSMUST00000121369 1.027±0.44 1.093±0.41 0.624±0.22 13.904±0.91 0.399±0.10 0.294±0.11 0.294±0.10 0.252±0.13 0.183±0.09 0.229±0.11 0.356±0.16 1.416±0.52 0.736±0.37 0.871±0.42
ENSMUST00000132831 N/A N/A N/A N/A N/A N/A N/A N/A 0.059±0.02 N/A N/A N/A N/A N/A
ENSMUST00000133372 N/A N/A N/A N/A N/A N/A N/A N/A 0.261±0.00 N/A N/A N/A N/A N/A
ENSMUST00000134281 N/A N/A N/A N/A N/A 0.796±0.00 N/A N/A 0.128±0.12 N/A 0.420±0.00 N/A 1.052±0.52 0.331±0.00
ENSMUST00000144213 N/A N/A N/A N/A N/A 0.641±0.00 N/A N/A 0.097±0.02 N/A N/A N/A N/A N/A
ENSMUST00000154786 N/A 1.574±0.23 N/A 30.396±0.00 N/A N/A N/A 0.678±0.09 N/A 0.615±0.00 0.495±0.00 1.855±0.12 2.525±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YS CIL_0004YS_0002 CGP 5:118190736-118266093

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000053019 rnft2 ring finger protein, transmembrane 2 protein_coding Danio_rerio
ENSG00000135119 RNFT2 ring finger protein, transmembrane 2 protein_coding Homo_sapiens

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