C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13414
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117516 Gm13414-001 ENSMUSG00000087635 10090 - 2:34649514-34650240 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartLiverMusclePlacentaTestisENSMUST00000117516
Transcript ID Bladder Brain Heart Liver Muscle Placenta Testis
ENSMUST00000117516 0.029±0.00 0.076±0.02 0.070±0.00 0.142±0.12 0.066±0.02 0.062±0.07 0.039±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008R5 CIL_0008R5_0002 VISTA 2:34054690-34656547
CIL_000961 CIL_000961_0002 VISTA 2:34056455-34659025
CIL_0008GT CIL_0008GT_0002 VISTA 2:34059231-34660874
CIL_0008Q0 CIL_0008Q0_0002 VISTA 2:34063448-34664810
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262177 DNAJB6-001 protein_coding Homo_sapiens 0 917
ENST00000405542 RP3-508D13.1-001 processed_pseudogene Homo_sapiens 0 250
ENST00000412557 DNAJB6-011 protein_coding Homo_sapiens 0 505
ENST00000413707 RP11-100E13.3-001 processed_pseudogene Homo_sapiens 0 484
ENST00000413963 RP11-300I6.5-001 processed_pseudogene Homo_sapiens 0 710
ENST00000417758 DNAJB6-009 protein_coding Homo_sapiens 0 907
ENST00000429029 DNAJB6-002 protein_coding Homo_sapiens 0 963
ENST00000432257 RP4-763G1.1-001 processed_pseudogene Homo_sapiens 0 688
ENST00000441291 DNAJB6-015 nonsense_mediated_decay Homo_sapiens 0 475
ENST00000441561 DNAJB6-008 protein_coding Homo_sapiens 0 571
ENST00000443280 DNAJB6-007 protein_coding Homo_sapiens 0 475
ENST00000452903 AC009502.1-001 processed_pseudogene Homo_sapiens 0 435
ENST00000453383 DNAJB6-012 protein_coding Homo_sapiens 0 381
ENST00000459889 DNAJB6-004 retained_intron Homo_sapiens 0 917
ENST00000465908 DNAJB6-017 processed_transcript Homo_sapiens 0 446
ENST00000485817 RP11-775J23.2-001 processed_pseudogene Homo_sapiens 0 579
ENST00000486083 DNAJB6-020 processed_transcript Homo_sapiens 0 475
ENST00000487480 DNAJB6-005 retained_intron Homo_sapiens 0 494
ENST00000488001 DNAJB6-014 processed_transcript Homo_sapiens 0 475
ENST00000515686 RP11-14I17.1-001 processed_pseudogene Homo_sapiens 0 562
ENST00000526843 RP11-676M6.1-001 processed_pseudogene Homo_sapiens 0 928

Loading