C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neugrin, neurite outgrowth associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000117989 Ngrn-001 ENSMUSG00000047084 10090 + 7:80261215-80265374 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000117989
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000117989 5.059±0.79 10.850±1.48 5.021±1.04 3.542±1.32 5.872±1.05 7.350±0.31 7.403±0.69 8.390±1.13 3.800±0.52 9.227±0.75 9.121±1.36 12.630±4.15 1.539±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008AY CIL_0008AY_0002 VISTA 7:80145068-80746500
CIL_0003H1 CIL_0003H1_0002 CGP 7:80246376-80265374

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005634 IDA nucleus
GO:0007399 IEA nervous system development
GO:0008150 ND biological_process
GO:0030154 IEA cell differentiation
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000331497 NGRN-001 processed_transcript Homo_sapiens 2e-29 135
ENST00000379095 NGRN-002 protein_coding Homo_sapiens 0 614
ENST00000403583 RP1-288M22.1-001 processed_pseudogene Homo_sapiens 0 374

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