C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neugrin, neurite outgrowth associated
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379095 NGRN-002 ENSG00000182768 9606 + 15:90265705-90278141 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryENST00000379095
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary
ENST00000379095 1.860±0.00 2.565±0.00 1.450±0.88 0.905±0.00 0.987±0.73 0.742±0.05 0.685±0.00 3.037±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008FE CIL_0008FE_0001 VISTA 15:90100149-90701385
CIL_0003GZ CIL_0003GZ_0001 CGP 15:90233808-90272208
CIL_0003H1 CIL_0003H1_0001 CGP 15:90249556-90278141

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005576 IEA extracellular region
GO:0005634 NAS nucleus
GO:0030182 NAS neuron differentiation
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117989 Ngrn-001 protein_coding Mus_musculus 0 614
ENSMUST00000019998 Perp-201 protein_coding Mus_musculus 0 549
ENSMUST00000138005 Ngrn-002 retained_intron Mus_musculus 5e-29 135
ENSMUST00000146544 Golga2-011 processed_transcript Mus_musculus 0.0005 53

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