C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane emp24 protein transport domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118036 Tmed5-003 ENSMUSG00000063406 10090 - 5:108106366-108132565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryPlacentaTestisENSMUST00000118036
Transcript ID Brain Colon Ovary Placenta Testis
ENSMUST00000118036 23.232±0.00 5.887±0.00 16.140±9.47 43.032±0.00 19.207±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZP CIL_0005ZP_0002 CGP 5:107908053-108109004
CIL_0005ZQ CIL_0005ZQ_0002 CGP 5:108065674-108132620
CIL_0005ZV CIL_0005ZV_0002 CGP 5:108106366-108232947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0006810 IEA transport
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370280 TMED5-004 protein_coding Homo_sapiens 0 324
ENST00000370282 TMED5-001 protein_coding Homo_sapiens 0 324
ENST00000370290 TMED5-002 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000370298 MTF2-001 protein_coding Homo_sapiens 0 573
ENST00000370303 MTF2-003 protein_coding Homo_sapiens 0 573
ENST00000467953 MTF2-007 processed_transcript Homo_sapiens 0 573
ENST00000471953 MTF2-002 processed_transcript Homo_sapiens 0 573
ENST00000476037 MTF2-008 processed_transcript Homo_sapiens 0 274
ENST00000479918 TMED5-005 protein_coding Homo_sapiens 0 324
ENST00000483033 TMED5-003 processed_transcript Homo_sapiens 7e-30 137
ENST00000489480 MTF2-004 processed_transcript Homo_sapiens 0 573
ENST00000540243 MTF2-201 protein_coding Homo_sapiens 0 573
ENST00000545708 MTF2-202 protein_coding Homo_sapiens 0 573

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