C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13880
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118421 Gm13880-001 ENSMUSG00000081010 10090 - 2:103819003-103819476 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonLiverOvaryPlacentaTestisENSMUST00000118421
Transcript ID Adipose Brain Breast Colon Liver Ovary Placenta Testis
ENSMUST00000118421 0.256±0.00 0.092±0.07 0.613±0.47 0.374±0.00 0.519±0.38 0.541±0.43 0.144±0.07 1.070±1.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000929 CIL_000929_0002 VISTA 2:103593010-104195664

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330149 TRAPPC6B-002 protein_coding Homo_sapiens 0 669
ENST00000347691 TRAPPC6B-001 protein_coding Homo_sapiens 0 377
ENST00000469361 TRAPPC6B-003 retained_intron Homo_sapiens 0 464
ENST00000554018 TRAPPC6B-006 protein_coding Homo_sapiens 0 363
ENST00000555269 TRAPPC6B-007 nonsense_mediated_decay Homo_sapiens 0 464
ENST00000556765 TRAPPC6B-005 nonsense_mediated_decay Homo_sapiens 0 213
ENST00000557764 TRAPPC6B-004 processed_transcript Homo_sapiens 0 294

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