C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein particle complex 6B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000330149 TRAPPC6B-002 ENSG00000182400 9606 - 14:39147812-39170322 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000330149
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000330149 4.635±0.00 3.663±0.00 11.800±1.48 3.913±1.75 2.191±1.20 3.382±0.60 2.229±1.32 3.834±1.29 2.788±0.37 2.023±0.99 5.408±2.43 4.170±2.55 10.472±2.83

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VX CIL_0003VX_0001 CGP 14:39114223-39170532
CIL_0003VY CIL_0003VY_0001 CGP 14:39147811-39183218

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021380 Trappc6b-201 protein_coding Mus_musculus 0 686
ENSMUST00000118421 Gm13880-001 processed_pseudogene Mus_musculus 0 669

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