C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: translational machinery associated 7 homolog (S. cerevisiae), pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118448 Tma7-ps-001 ENSMUSG00000059058 10090 + 1:171711088-171711282 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMusclePlacentaTestisENSMUST00000118448
Transcript ID Brain Liver Muscle Placenta Testis
ENSMUST00000118448 64.504±0.00 1.101±0.50 1.004±0.33 202.974±167.83 12.826±9.64

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000418558 RP11-340I6.4-001 processed_pseudogene Homo_sapiens 0 239
ENST00000420575 RP4-631H13.6-001 processed_pseudogene Homo_sapiens 0 243
ENST00000433132 RP1-159A19.3-001 processed_pseudogene Homo_sapiens 0 272
ENST00000434626 AC108059.2-001 processed_pseudogene Homo_sapiens 1e-39 165
ENST00000438370 CCDC51-006 protein_coding Homo_sapiens 2e-17 94
ENST00000438607 TMA7-001 protein_coding Homo_sapiens 0 300
ENST00000477624 TMA7-004 retained_intron Homo_sapiens 0 285
ENST00000479126 TMA7-003 retained_intron Homo_sapiens 7e-28 128
ENST00000520566 CTB-79E8.3-001 processed_pseudogene Homo_sapiens 0 278
ENST00000521201 CTC-308K20.4-001 processed_pseudogene Homo_sapiens 2e-32 141

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