C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521201 CTC-308K20.4-001 ENSG00000254328 9606 + 5:172986680-172987198 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartLiverMuscleENST00000521201
Transcript ID Adipose Adrenal Brain Breast Heart Liver Muscle
ENST00000521201 0.191±0.00 0.519±0.00 0.109±0.00 0.425±0.00 0.300±0.00 0.099±0.00 1.064±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KN CIL_0008KN_0001 VISTA 5:172471670-173074006
CIL_000915 CIL_000915_0001 VISTA 5:172905793-173506594
CIL_0008HF CIL_0008HF_0001 VISTA 5:172963494-173565311
CIL_00023T CIL_00023T_0001 CGP 5:172983757-173139284

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122256 Gm14200-001 processed_pseudogene Mus_musculus 2e-32 141
ENSMUST00000118448 Tma7-ps-001 processed_pseudogene Mus_musculus 2e-32 141
ENSMUST00000120584 Gm15610-001 processed_pseudogene Mus_musculus 2e-32 141
ENSMUST00000167504 Tma7-201 protein_coding Mus_musculus 2e-32 141
ENSMUST00000171662 Gm9613-001 processed_pseudogene Mus_musculus 2e-28 128
ENSMUST00000118935 Gm15235-001 processed_pseudogene Mus_musculus 1e-19 99

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