C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SKI-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118470 Skil-001 ENSMUSG00000027660 10090 + 3:31095058-31122577 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118470
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118470 1.651±1.02 1.328±0.51 4.593±0.38 2.789±0.25 2.047±1.14 3.473±1.56 0.833±0.43 1.873±0.33 1.608±0.89 3.387±1.49 0.504±0.22 4.164±1.96 3.744±1.52 0.399±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XK CIL_0002XK_0002 CGP 3:30995747-31122577
CIL_0002Z6 CIL_0002Z6_0002 CGP 3:31095058-31164324

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001825 IMP blastocyst formation
GO:0002260 IMP lymphocyte homeostasis
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IBA cytoplasm
GO:0007050 IMP cell cycle arrest
GO:0007179 IGI transforming growth factor beta receptor signaling pathway
GO:0030512 IMP negative regulation of transforming growth factor beta receptor signaling pathway
GO:0043234 ISO protein complex
GO:0045596 IDA negative regulation of cell differentiation
GO:0046332 IBA SMAD binding
GO:0070306 IDA lens fiber cell differentiation
GO:1902043 IMP positive regulation of extrinsic apoptotic signaling pathway via death domain receptors
GO:1902231 IMP positive regulation of intrinsic apoptotic signaling pathway in response to DNA damage

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259119 SKIL-011 protein_coding Homo_sapiens 0 1493
ENST00000413427 SKIL-002 protein_coding Homo_sapiens 0 1921
ENST00000426052 SKIL-003 protein_coding Homo_sapiens 0 1435
ENST00000458537 SKIL-001 protein_coding Homo_sapiens 0 1493
ENST00000470571 SKIL-009 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000476188 SKIL-007 protein_coding Homo_sapiens 0 307
ENST00000477216 SKIL-005 processed_transcript Homo_sapiens 7e-22 108
ENST00000490894 SKIL-010 retained_intron Homo_sapiens 0 198

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