C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 3 (class II)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118828 Rab11fip3-002 ENSMUSG00000037098 10090 - 17:25989036-26021860 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000118828
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000118828 2.807±0.00 4.684±1.83 2.210±0.00 4.590±2.12 3.538±0.24 2.951±0.77 213.307±20.13 0.701±0.41 3.118±0.01 5.720±2.30 10.667±6.68 6.201±0.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 ISS cytokinesis
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005768 ISS endosome
GO:0005813 ISS centrosome
GO:0016020 IDA membrane
GO:0017137 ISS Rab GTPase binding
GO:0030306 ISS ADP-ribosylation factor binding
GO:0030496 ISS midbody
GO:0032154 ISS cleavage furrow
GO:0032456 ISS endocytic recycling
GO:0042803 ISS protein homodimerization activity
GO:0055037 ISS recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262305 RAB11FIP3-001 protein_coding Homo_sapiens 0 1465
ENST00000434585 RAB11FIP3-010 protein_coding Homo_sapiens 0 1134
ENST00000449879 RAB11FIP3-009 protein_coding Homo_sapiens 0 459
ENST00000450428 RAB11FIP3-201 protein_coding Homo_sapiens 0 1469
ENST00000452814 RAB11FIP3-002 protein_coding Homo_sapiens 0 532
ENST00000461009 RAB11FIP3-007 retained_intron Homo_sapiens 0 241
ENST00000464263 RAB11FIP3-006 retained_intron Homo_sapiens 0 255
ENST00000483002 RAB11FIP3-008 retained_intron Homo_sapiens 0 344
ENST00000487899 RAB11FIP3-005 retained_intron Homo_sapiens 0 403
ENST00000610934 RAB11FIP3-202 protein_coding Homo_sapiens 0 1469
ENST00000611004 RAB11FIP3-203 protein_coding Homo_sapiens 0 1465

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