C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 3 (class II)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000434585 RAB11FIP3-010 ENSG00000090565 9606 + 16:426379-522355 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000434585
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000434585 10.791±0.00 5.989±0.00 4.292±0.00 8.488±4.21 3.456±2.50 5.062±4.33 2.552±2.14 5.729±5.23 3.509±0.00 3.143±1.99 3.634±2.14 8.517±6.50 7.382±1.88 7.164±0.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031N CIL_00031N_0002 CGP 16:401826-523011

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122103 Rab11fip3-004 protein_coding Mus_musculus 0 1919
ENSMUST00000120691 Rab11fip3-001 protein_coding Mus_musculus 0 1134
ENSMUST00000118828 Rab11fip3-002 protein_coding Mus_musculus 0 1134
ENSMUST00000144587 Rab11fip3-003 retained_intron Mus_musculus 0 654
ENSDART00000010764 rab11fip3-201 protein_coding Danio_rerio 0 375
ENSDART00000136836 rab11fip3-001 protein_coding Danio_rerio 0 375
ENSMUST00000148021 Rab11fip3-006 protein_coding Mus_musculus 0 300

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