C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: mediator complex subunit 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000118833 Med28-003 ENSMUSG00000015804 10090 + 5:45520317-45525599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000118833
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000118833 24.468±5.52 115.495±3.22 25.005±4.47 31.397±6.71 33.804±3.24 34.109±14.46 15.886±1.91 54.872±4.23 17.838±4.25 40.050±7.50 16.025±2.04 37.667±13.81 27.007±14.65 78.420±30.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X6 CIL_0005X6_0002 CGP 5:45493374-45529276
CIL_0005X3 CIL_0005X3_0002 CGP 5:45520221-45639501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005856 IDA cytoskeleton
GO:0016592 IDA mediator complex
GO:0019827 IMP stem cell maintenance
GO:0030864 IDA cortical actin cytoskeleton
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237380 MED28-001 protein_coding Homo_sapiens 0 254
ENST00000433137 MED28P4-001 processed_pseudogene Homo_sapiens 0 195
ENST00000444288 MED28P3-001 processed_pseudogene Homo_sapiens 2e-37 159
ENST00000456611 MED28P7-001 processed_pseudogene Homo_sapiens 4e-39 165
ENST00000503945 MED28-002 nonsense_mediated_decay Homo_sapiens 0 254
ENST00000612711 MED28-201 protein_coding Homo_sapiens 0 246

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