C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PAP associated domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119033 Papd5-001 ENSMUSG00000036779 10090 + 8:88199213-88259722 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119033
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119033 4.099±1.79 3.645±1.04 1.509±0.45 4.132±0.09 2.787±0.85 1.858±0.00 2.192±0.66 4.080±1.59 2.695±0.89 5.527±0.92 2.598±0.00 2.578±0.82 3.697±0.90 11.161±5.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003PP CIL_0003PP_0002 CGP 8:88137855-88259722
CIL_0000OK CIL_0000OK_0002 CGP 8:88199213-88329962

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003887 IEA DNA-directed DNA polymerase activity
GO:0004652 IEA polynucleotide adenylyltransferase activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0007067 IEA mitotic nuclear division
GO:0016779 IEA nucleotidyltransferase activity
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0071044 ISS histone mRNA catabolic process
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357464 PAPD5-004 nonsense_mediated_decay Homo_sapiens 0 2771
ENST00000436909 PAPD5-001 protein_coding Homo_sapiens 0 4916
ENST00000561678 PAPD5-002 protein_coding Homo_sapiens 0 2215
ENST00000562717 PAPD5-003 processed_transcript Homo_sapiens 0 2076

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