C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: v-erb-a erythroblastic leukemia viral oncogene homolog 4 (avian)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119142 Erbb4-002 ENSMUSG00000062209 10090 - 1:68032186-69107756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119142
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119142 0.016±0.00 0.074±0.00 0.706±0.28 0.184±0.00 0.011±0.00 0.397±0.13 0.334±0.16 0.051±0.06 0.086±0.02 0.025±0.01 0.038±0.01 0.003±0.00 0.071±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000164 CIL_000164_0002 CGP 1:67123026-69108059
CIL_00083V CIL_00083V_0002 VISTA 1:67745929-68348127
CIL_0006PA CIL_0006PA_0002 CGP 1:68032186-69687245

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001755 IMP neural crest cell migration
GO:0004714 ISS transmembrane receptor protein tyrosine kinase activity
GO:0004716 IEA receptor signaling protein tyrosine kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0006351 IEA transcription, DNA-templated
GO:0007169 ISS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007399 IMP nervous system development
GO:0007507 IMP heart development
GO:0007595 IMP lactation
GO:0008284 ISS positive regulation of cell proliferation
GO:0008285 ISS negative regulation of cell proliferation
GO:0009880 IMP embryonic pattern specification
GO:0016021 IEA integral component of membrane
GO:0016477 ISS cell migration
GO:0018108 ISS peptidyl-tyrosine phosphorylation
GO:0021551 IMP central nervous system morphogenesis
GO:0021889 IMP olfactory bulb interneuron differentiation
GO:0023014 IEA signal transduction by phosphorylation
GO:0030334 IMP regulation of cell migration
GO:0042523 IMP positive regulation of tyrosine phosphorylation of Stat5 protein
GO:0043066 ISS negative regulation of apoptotic process
GO:0043235 ISO receptor complex
GO:0043552 ISS positive regulation of phosphatidylinositol 3-kinase activity
GO:0043653 ISS mitochondrial fragmentation involved in apoptotic process
GO:0045165 IDA cell fate commitment
GO:0045893 IMP positive regulation of transcription, DNA-templated
GO:0046777 ISS protein autophosphorylation
GO:0060045 IMP positive regulation of cardiac muscle cell proliferation
GO:0060644 IMP mammary gland epithelial cell differentiation
GO:0060749 IMP mammary gland alveolus development
GO:0061026 IMP cardiac muscle tissue regeneration
GO:0070374 ISS positive regulation of ERK1 and ERK2 cascade
GO:2000366 IMP positive regulation of STAT protein import into nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260943 ERBB4-004 protein_coding Homo_sapiens 0 2479
ENST00000342788 ERBB4-001 protein_coding Homo_sapiens 0 5437
ENST00000402597 ERBB4-201 protein_coding Homo_sapiens 0 5336
ENST00000435846 ERBB4-005 protein_coding Homo_sapiens 0 669
ENST00000436443 ERBB4-002 protein_coding Homo_sapiens 0 4141
ENST00000459774 ERBB4-007 retained_intron Homo_sapiens 0 239
ENST00000463121 ERBB4-008 processed_transcript Homo_sapiens 2e-30 135
ENST00000484474 ERBB4-006 processed_transcript Homo_sapiens 0 553
ENST00000484594 ERBB4-003 retained_intron Homo_sapiens 0 3205

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