C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: predicted gene 12345
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119288 Gm12345-001 ENSMUSG00000102038 10090 + 11:77149628-77150525 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLiverTestisENSMUST00000119288
Transcript ID Adrenal Brain Liver Testis
ENSMUST00000119288 0.161±0.07 0.047±0.00 0.012±0.00 0.336±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000873 CIL_000873_0002 VISTA 11:77122469-77724441
CIL_0009BZ CIL_0009BZ_0002 VISTA 11:77122483-77724456

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368019 USF1-003 protein_coding Homo_sapiens 0 571
ENST00000368020 USF1-002 protein_coding Homo_sapiens 0 924
ENST00000368021 USF1-001 protein_coding Homo_sapiens 0 924
ENST00000472217 USF1-005 retained_intron Homo_sapiens 0 244
ENST00000473969 USF1-004 nonsense_mediated_decay Homo_sapiens 0 1122
ENST00000491629 USF1-007 retained_intron Homo_sapiens 0 363
ENST00000496363 USF1-006 retained_intron Homo_sapiens 0 686
ENST00000528768 USF1-009 protein_coding Homo_sapiens 0 562
ENST00000531842 USF1-011 protein_coding Homo_sapiens 0 459
ENST00000534633 USF1-008 protein_coding Homo_sapiens 0 396

Loading