C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000473969 USF1-004 ENSG00000158773 9606 - 1:161039920-161045962 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungOvaryPlacentaENST00000473969
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Ovary Placenta
ENST00000473969 6.245±0.00 7.887±0.00 4.181±0.55 3.244±1.33 2.095±0.00 0.970±0.00 4.294±0.00 2.629±0.08 3.950±0.57

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001284 Usf1-003 nonsense_mediated_decay Mus_musculus 0 1330
ENSMUST00000119288 Gm12345-001 processed_pseudogene Mus_musculus 0 1122
ENSMUST00000167546 Usf1-201 protein_coding Mus_musculus 0 965
ENSMUST00000161241 Usf1-001 protein_coding Mus_musculus 0 965
ENSMUST00000160486 Usf1-002 protein_coding Mus_musculus 0 852
ENSMUST00000160335 Usf1-009 retained_intron Mus_musculus 0 510
ENSMUST00000159371 Usf1-007 retained_intron Mus_musculus 0 457
ENSMUST00000159929 Usf1-008 retained_intron Mus_musculus 0 344
ENSMUST00000159207 Usf1-004 protein_coding Mus_musculus 0 305
ENSMUST00000161297 Usf1-006 processed_transcript Mus_musculus 0 254
ENSMUST00000159466 Usf1-005 retained_intron Mus_musculus 0 211

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