C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 5844
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119417 Gm5844-001 ENSMUSG00000082896 10090 + 3:18008806-18010996 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000119417
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000119417 1.278±0.17 0.995±0.30 0.248±0.17 2.753±2.74 0.363±0.14 0.383±0.25 0.283±0.07 0.501±0.15 1.419±1.93 0.660±0.06 0.025±0.00 1.755±1.17 0.392±0.34 2.693±1.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007NS CIL_0007NS_0006 UCNEbase 3:16820555-18937830
CIL_0008AX CIL_0008AX_0002 VISTA 3:17757876-18358899

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216281 HSP90AA1-002 protein_coding Homo_sapiens 0 2769
ENST00000334701 HSP90AA1-001 protein_coding Homo_sapiens 0 2769
ENST00000378770 HSP90AA4P-002 processed_transcript Homo_sapiens 0 529
ENST00000436135 RP11-144L1.8-001 processed_pseudogene Homo_sapiens 0 2058
ENST00000438353 HSP90AA5P-001 transcribed_processed_pseudogene Homo_sapiens 0 1890
ENST00000506634 HSP90AA6P-001 transcribed_processed_pseudogene Homo_sapiens 0 822
ENST00000506915 HSP90AA4P-001 transcribed_processed_pseudogene Homo_sapiens 0 2122
ENST00000530115 RP11-1033A18.1-001 processed_pseudogene Homo_sapiens 0 2632
ENST00000553585 HSP90AA1-005 protein_coding Homo_sapiens 0 337
ENST00000554401 HSP90AA1-003 nonsense_mediated_decay Homo_sapiens 0 1502
ENST00000556554 HSP90AA1-004 retained_intron Homo_sapiens 0 252
ENST00000557234 HSP90AA1-008 nonsense_mediated_decay Homo_sapiens 0 381
ENST00000560130 HSP90AA1-009 retained_intron Homo_sapiens 0 329

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