C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: mediator complex subunit 28
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000119579 Med28-002 ENSMUSG00000015804 10090 + 5:45520307-45525598 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastPlacentaENSMUST00000119579
Transcript ID Breast Placenta
ENSMUST00000119579 16.342±0.00 17.787±5.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X6 CIL_0005X6_0002 CGP 5:45493374-45529276
CIL_0005X3 CIL_0005X3_0002 CGP 5:45520221-45639501

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005856 IDA cytoskeleton
GO:0016592 IDA mediator complex
GO:0019827 IMP stem cell maintenance
GO:0030864 IDA cortical actin cytoskeleton
GO:0051151 IMP negative regulation of smooth muscle cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000237380 MED28-001 protein_coding Homo_sapiens 0 257
ENST00000433137 MED28P4-001 processed_pseudogene Homo_sapiens 0 198
ENST00000444288 MED28P3-001 processed_pseudogene Homo_sapiens 1e-38 163
ENST00000456611 MED28P7-001 processed_pseudogene Homo_sapiens 3e-40 169
ENST00000503945 MED28-002 nonsense_mediated_decay Homo_sapiens 0 257
ENST00000612711 MED28-201 protein_coding Homo_sapiens 0 250

Loading