C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valosin containing protein, related sequence
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120233 Vcp-rs-001 ENSMUSG00000083327 10090 - X:104345829-104348234 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000120233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000120233 5.841±0.52 2.966±0.75 2.487±1.22 5.886±2.93 2.323±0.62 1.372±0.42 2.875±0.29 2.507±0.35 3.944±0.82 2.357±0.84 1.468±0.47 4.558±3.21 10.558±13.80 3.710±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000121 CIL_000121_0002 CGP X:104077434-104413856
CIL_000120 CIL_000120_0002 CGP X:104280657-104507490

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000358901 VCP-001 protein_coding Homo_sapiens 0 3243
ENST00000417448 VCP-004 protein_coding Homo_sapiens 0 664
ENST00000448530 VCP-006 protein_coding Homo_sapiens 0 846
ENST00000466100 VCP-002 retained_intron Homo_sapiens 0 287
ENST00000479300 VCP-003 retained_intron Homo_sapiens 0 604
ENST00000480327 VCP-007 retained_intron Homo_sapiens 0 449
ENST00000493886 VCP-005 retained_intron Homo_sapiens 0 1925

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