C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: valosin containing protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000479300 VCP-003 ENSG00000165280 9606 - 9:35059061-35059892 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLiverLungMuscleENST00000479300
Transcript ID Bladder Breast Colon Kidney Liver Lung Muscle
ENST00000479300 27.036±0.00 38.458±0.00 41.428±0.00 23.715±0.00 21.897±0.00 32.449±0.00 41.876±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SG CIL_0005SG_0001 CGP 9:35041095-35073249
CIL_0005SF CIL_0005SF_0001 CGP 9:35056064-35080016

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030164 Vcp-001 protein_coding Mus_musculus 0 627
ENSMUST00000120233 Vcp-rs-001 processed_pseudogene Mus_musculus 0 604
ENSMUST00000139127 1700022I11Rik-002 nonsense_mediated_decay Mus_musculus 0 196

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