C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEP domain containing 1a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000120272 Depdc1a-001 ENSMUSG00000028175 10090 + 3:159495433-159529955 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonLiverLungOvaryPlacentaTestisENSMUST00000120272
Transcript ID Adipose Bladder Brain Breast Colon Liver Lung Ovary Placenta Testis
ENSMUST00000120272 0.171±0.10 0.075±0.00 1.984±0.94 0.162±0.05 0.448±0.08 7.981±5.20 0.067±0.02 0.299±0.17 1.166±1.04 0.035±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0017053 IEA transcriptional repressor complex
GO:0035556 IEA intracellular signal transduction
GO:0045892 IEA negative regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000370966 DEPDC1-001 protein_coding Homo_sapiens 0 1024
ENST00000421655 RP11-18B3.2-001 processed_pseudogene Homo_sapiens 0 2300
ENST00000456315 DEPDC1-002 protein_coding Homo_sapiens 0 2649
ENST00000488146 DEPDC1-005 retained_intron Homo_sapiens 0 804
ENST00000489862 DEPDC1-003 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000525124 DEPDC1-004 protein_coding Homo_sapiens 0 460
ENST00000559530 RP11-456J20.1-001 processed_pseudogene Homo_sapiens 0 1485

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