C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 13551
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121286 Gm13551-001 ENSMUSG00000083276 10090 + 2:59396488-59396917 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENSMUST00000121286
Transcript ID Ovary Placenta
ENSMUST00000121286 0.880±0.48 0.056±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005U5 CIL_0005U5_0002 CGP 2:59160850-59505020
CIL_00083G CIL_00083G_0002 VISTA 2:59262344-59863132
CIL_0007X8 CIL_0007X8_0002 VISTA 2:59297936-59901449
CIL_0008PS CIL_0008PS_0002 VISTA 2:59368906-59972125

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053208 rps14-201 protein_coding Danio_rerio 0 207
ENST00000312037 RPS14-005 protein_coding Homo_sapiens 0 370
ENST00000401695 RPS14-001 protein_coding Homo_sapiens 0 370
ENST00000407193 RPS14-201 protein_coding Homo_sapiens 0 370
ENST00000437271 AC093106.4-001 processed_pseudogene Homo_sapiens 2e-40 169
ENST00000455621 RP4-765C7.2-001 processed_pseudogene Homo_sapiens 0 254
ENST00000457263 RPS14P3-001 processed_pseudogene Homo_sapiens 0 316
ENST00000518139 RPS14-004 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000519690 RPS14-002 retained_intron Homo_sapiens 0 259
ENST00000519855 RPS14-007 protein_coding Homo_sapiens 0 191
ENST00000521466 RPS14-006 protein_coding Homo_sapiens 0 370
ENST00000567734 RP11-483K5.2-001 processed_pseudogene Homo_sapiens 0 213

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