C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005U5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144283-ENSG00000163331 CGP 9606 2:158456964-158862958
GeneTranscriptPositionBiotype
ENSG00000144283 (PKP4)
plakophilin 4 		ENST00000389757 (PKP4-001) 158457099-158682879 protein_coding
ENST00000389759 (PKP4-002) 158457112-158681429 protein_coding
ENST00000411900 (PKP4-009) 158457136-158588950 nonsense_mediated_decay
ENST00000421462 (PKP4-005) 158457455-158663003 nonsense_mediated_decay
ENST00000426248 (PKP4-003) 158456964-158681052 nonsense_mediated_decay
ENST00000452162 (PKP4-004) 158457133-158663066 nonsense_mediated_decay
ENST00000457109 (PKP4-010) 158457114-158621022 nonsense_mediated_decay
ENST00000462335 (PKP4-011) 158458193-158621396 processed_transcript
ENST00000479398 (PKP4-008) 158457133-158458331 processed_transcript
ENST00000480171 (PKP4-006) 158662242-158681426 retained_intron
ENST00000481115 (PKP4-012) 158577341-158631932 nonsense_mediated_decay
ENST00000483881 (PKP4-014) 158663058-158666659 retained_intron
ENST00000486254 (PKP4-007) 158669170-158677355 retained_intron
ENST00000492496 (PKP4-016) 158642520-158661764 retained_intron
ENST00000494945 (PKP4-013) 158632474-158640759 processed_transcript
ENST00000495123 (PKP4-015) 158662990-158669306 processed_transcript
ENSG00000163331 (DAPL1)
death associated protein-like 1 		ENST00000309950 (DAPL1-001) 158795317-158815993 protein_coding
ENST00000343761 (DAPL1-003) 158804298-158862781 protein_coding
ENST00000409042 (DAPL1-002) 158795317-158853782 protein_coding
ENST00000619477 (DAPL1-201) 158795358-158862958 protein_coding
ENST00000621326 (DAPL1-202) 158795317-158815993 protein_coding
ENSG00000227331 (AC005042.2)
 ENST00000393397 (AC005042.2-001) 158548425-158549224 processed_pseudogene
ENSG00000243792 (OR7E89P)
olfactory receptor, family 7, subfamily E, member 89 pseudogene 		ENST00000411729 (OR7E89P-001) 158853755-158854576 transcribed_unprocessed_pseudogene
ENSG00000251491 (OR7E28P)
olfactory receptor, family 7, subfamily E, member 28 pseudogene 		ENST00000505191 (OR7E28P-001) 158862311-158863285 transcribed_unprocessed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005U5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026991-ENSMUSG00000026989 CGP 10090 2:59160850-59505020
GeneTranscriptPositionBiotype
ENSMUSG00000026989 (Dapl1)
death associated protein-like 1 		ENSMUST00000028369 (Dapl1-001) 59484653-59505020 protein_coding
ENSMUST00000144415 (Dapl1-002) 59484669-59505020 processed_transcript
ENSMUSG00000026991 (Pkp4)
plakophilin 4 		ENSMUST00000037903 (Pkp4-004) 59161008-59355208 protein_coding
ENSMUST00000102754 (Pkp4-001) 59160850-59355205 protein_coding
ENSMUST00000112577 (Pkp4-010) 59229749-59355205 protein_coding
ENSMUST00000122888 (Pkp4-008) 59161927-59215031 processed_transcript
ENSMUST00000123908 (Pkp4-002) 59160882-59338873 protein_coding
ENSMUST00000124127 (Pkp4-012) 59342197-59348256 processed_transcript
ENSMUST00000124725 (Pkp4-011) 59266184-59308237 processed_transcript
ENSMUST00000126749 (Pkp4-009) 59200774-59215046 processed_transcript
ENSMUST00000151452 (Pkp4-013) 59322616-59355205 processed_transcript
ENSMUST00000168631 (Pkp4-201) 59160850-59355204 protein_coding
ENSMUST00000183359 (Pkp4-003) 59160881-59354824 nonsense_mediated_decay
ENSMUST00000183625 (Pkp4-006) 59161020-59305134 processed_transcript
ENSMUST00000184332 (Pkp4-005) 59161043-59338876 nonsense_mediated_decay
ENSMUST00000184705 (Pkp4-007) 59161927-59305366 nonsense_mediated_decay
ENSMUSG00000080982 (Gm13549)
predicted gene 13549 		ENSMUST00000118339 (Gm13549-001) 59398986-59399781 processed_pseudogene
ENSMUSG00000083276 (Gm13551)
predicted gene 13551 		ENSMUST00000121286 (Gm13551-001) 59396488-59396917 processed_pseudogene
ENSMUSG00000087455 (5330411J11Rik)
RIKEN cDNA 5330411J11 gene 		ENSMUST00000137162 (5330411J11Rik-001) 59382502-59386682 processed_transcript
ENSMUST00000155111 (5330411J11Rik-002) 59383793-59387471 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005U5_0001ENSG00000144283ENST00000389757ENST00000389759ENST00000411900ENST00000421462ENST00000426248ENST00000452162ENST00000457109ENST00000462335ENST00000479398ENST00000480171ENST00000481115ENST00000483881ENST00000486254ENST00000492496ENST00000494945ENST00000495123ENSG00000163331ENST00000309950ENST00000343761ENST00000409042ENST00000619477ENST00000621326ENSG00000227331ENST00000393397ENSG00000243792ENST00000411729ENSG00000251491ENST00000505191CIL_0005U5_0002ENSMUSG00000026989ENSMUST00000028369ENSMUST00000144415ENSMUSG00000026991ENSMUST00000037903ENSMUST00000102754ENSMUST00000112577ENSMUST00000122888ENSMUST00000123908ENSMUST00000124127ENSMUST00000124725ENSMUST00000126749ENSMUST00000151452ENSMUST00000168631ENSMUST00000183359ENSMUST00000183625ENSMUST00000184332ENSMUST00000184705ENSMUSG00000080982ENSMUST00000118339ENSMUSG00000083276ENSMUST00000121286ENSMUSG00000087455ENSMUST00000137162ENSMUST00000155111
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005U5_0001ENSG00000144283ENST00000389757ENST00000389759ENST00000421462ENST00000426248ENST00000452162ENST00000480171ENST00000486254ENSG00000163331ENST00000309950ENST00000343761ENST00000409042ENST00000621326ENSG00000227331ENST00000393397ENSG00000243792ENST00000411729ENSG00000251491ENST00000505191CIL_0005U5_0002ENSMUSG00000026989ENSMUST00000028369ENSMUST00000144415ENSMUSG00000026991ENSMUST00000037903ENSMUST00000102754ENSMUST00000112577ENSMUST00000151452ENSMUST00000168631ENSMUST00000183359ENSMUST00000183625ENSMUST00000184332ENSMUSG00000080982ENSMUST00000118339ENSMUSG00000083276ENSMUST00000121286ENSMUSG00000087455ENSMUST00000137162ENSMUST00000155111
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144283 ENST00000389757 N/A N/A 3.024±0.00 N/A 0.875±0.00 1.711±0.00 N/A 4.862±3.58 1.025±0.00 N/A N/A 2.952±0.94 0.404±0.03 N/A
ENST00000389759 9.482±0.00 6.563±0.00 N/A 19.714±5.43 7.273±0.00 6.410±3.05 5.148±3.07 24.796±19.42 1.891±0.23 5.793±2.75 4.203±0.00 12.581±10.25 2.859±0.87 8.534±0.74
ENST00000411900 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421462 N/A N/A 5.896±0.00 N/A N/A N/A 1.524±0.00 N/A 2.457±0.00 N/A N/A 3.759±0.00 N/A N/A
ENST00000426248 N/A N/A 3.527±0.00 10.907±0.00 2.229±0.00 N/A 3.724±0.00 N/A 1.428±0.10 3.805±0.00 1.148±0.00 16.983±0.00 1.281±0.87 13.535±0.00
ENST00000452162 N/A N/A 13.636±0.00 N/A 4.233±0.00 6.064±0.00 N/A N/A N/A N/A 0.710±0.00 4.798±0.00 N/A N/A
ENST00000457109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479398 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480171 N/A 3.992±0.00 6.467±0.00 N/A 3.399±0.93 N/A N/A N/A 1.762±0.00 2.927±0.00 N/A 4.790±1.64 N/A N/A
ENST00000481115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.942±0.00 N/A N/A N/A
ENST00000492496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000163331 ENST00000309950 0.472±0.00 N/A N/A 0.178±0.11 0.478±0.00 0.867±0.00 N/A N/A 0.081±0.00 0.789±0.00 N/A 6.989±2.66 N/A 2.300±2.19
ENST00000343761 N/A N/A N/A 0.096±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409042 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.144±0.00
ENST00000619477 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621326 0.128±0.00 0.392±0.00 N/A 0.150±0.00 0.717±0.00 0.482±0.00 0.134±0.00 1.756±0.00 N/A 0.544±0.00 0.021±0.00 N/A 0.044±0.00 0.539±0.00
ENSG00000227331 ENST00000393397 0.059±0.00 0.188±0.00 1.655±0.00 0.309±0.00 0.358±0.06 0.280±0.00 0.302±0.00 0.512±0.41 N/A 0.409±0.29 N/A 0.202±0.22 N/A 0.074±0.00
ENSG00000243792 ENST00000411729 N/A N/A N/A N/A 0.111±0.00 N/A N/A N/A N/A N/A N/A 0.430±0.00 N/A 0.500±0.00
ENSG00000251491 ENST00000505191 N/A N/A N/A N/A 0.237±0.00 0.082±0.00 N/A N/A N/A N/A N/A N/A N/A 0.446±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026989 ENSMUST00000028369 0.098±0.00 N/A 2.236±0.79 0.107±0.04 2.459±1.19 0.231±0.07 0.148±0.00 0.415±0.28 0.054±0.04 1.201±0.54 0.723±0.51 0.283±0.08 0.145±0.06 1.836±0.55
ENSMUST00000144415 N/A N/A N/A 0.014±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.871±0.00
ENSMUSG00000026991 ENSMUST00000037903 4.341±0.00 1.274±0.00 N/A N/A 3.323±0.20 7.982±1.35 N/A 52.678±9.00 5.934±3.35 8.269±1.39 0.529±0.00 4.209±1.36 5.370±0.53 0.596±0.00
ENSMUST00000102754 5.590±1.63 N/A N/A 8.606±0.73 2.394±0.00 N/A 11.721±1.65 N/A 2.208±0.00 N/A 1.196±0.56 N/A N/A 2.318±1.17
ENSMUST00000112577 N/A 2.116±0.38 N/A N/A 2.423±0.20 N/A N/A N/A 3.530±0.50 N/A N/A 6.947±1.75 N/A N/A
ENSMUST00000122888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123908 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124725 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126749 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151452 N/A N/A 9.978±1.08 54.606±0.00 3.531±0.00 N/A N/A N/A 3.208±0.39 N/A 0.850±0.14 11.473±6.59 14.330±8.69 5.643±0.00
ENSMUST00000168631 7.393±1.71 N/A 9.453±0.76 N/A 4.059±0.80 N/A 4.567±1.33 N/A 4.486±1.42 3.625±0.00 1.076±0.40 2.931±0.00 2.820±1.23 N/A
ENSMUST00000183359 3.330±0.24 2.077±0.70 N/A 8.810±6.82 1.774±0.00 2.590±0.00 4.241±0.20 14.758±2.11 2.960±1.02 3.679±0.20 0.671±0.07 4.527±0.36 4.578±1.77 0.906±0.00
ENSMUST00000183625 N/A 15.304±4.03 N/A N/A 30.772±4.58 44.102±7.71 N/A 222.114±46.80 29.155±3.13 62.675±10.48 N/A 50.452±6.06 N/A 8.921±0.93
ENSMUST00000184332 7.618±1.59 10.730±2.18 N/A 22.802±0.00 8.786±3.44 11.902±1.57 4.962±0.00 30.564±6.16 7.964±2.34 19.287±2.82 N/A 21.406±4.15 9.941±0.00 1.474±0.26
ENSMUST00000184705 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080982 ENSMUST00000118339 0.052±0.00 N/A N/A 0.054±0.00 N/A N/A N/A N/A 0.024±0.00 0.061±0.00 N/A 0.323±0.17 0.063±0.03 N/A
ENSMUSG00000083276 ENSMUST00000121286 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.880±0.48 0.056±0.04 N/A
ENSMUSG00000087455 ENSMUST00000137162 0.076±0.06 0.094±0.05 0.015±0.01 0.022±0.01 N/A N/A N/A N/A 0.012±0.01 N/A N/A 0.579±0.33 0.018±0.01 0.491±0.46
ENSMUST00000155111 0.060±0.00 0.218±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.085±0.23 0.100±0.07 N/A

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