C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein, transmembrane 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121369 Rnft2-002 ENSMUSG00000032850 10090 - 5:118190742-118245116 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121369
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121369 1.027±0.44 1.093±0.41 0.624±0.22 13.904±0.91 0.399±0.10 0.294±0.11 0.294±0.10 0.252±0.13 0.183±0.09 0.229±0.11 0.356±0.16 1.416±0.52 0.736±0.37 0.871±0.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004YS CIL_0004YS_0002 CGP 5:118190736-118266093

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000074979 rnft2-201 protein_coding Danio_rerio 0 305
ENST00000257575 RNFT2-001 protein_coding Homo_sapiens 0 1640
ENST00000319176 RNFT2-004 protein_coding Homo_sapiens 0 817
ENST00000392549 RNFT2-201 protein_coding Homo_sapiens 0 1640
ENST00000407967 RNFT2-002 protein_coding Homo_sapiens 0 1459
ENST00000547718 RNFT2-003 nonsense_mediated_decay Homo_sapiens 0 1282
ENST00000622220 RNFT2-202 protein_coding Homo_sapiens 0 817

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