C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin VB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000121875 Myo5b-002 ENSMUSG00000025885 10090 + 18:74442607-74770805 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000121875
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000121875 1.183±0.01 0.861±0.28 2.792±0.09 3.463±4.57 0.551±0.18 7.946±1.52 1.877±0.10 9.966±3.02 1.103±0.55 4.111±0.61 0.132±0.02 2.102±0.63 3.328±1.85 8.442±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001F3 CIL_0001F3_0002 CGP 18:74283090-74771493

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003774 IEA motor activity
GO:0005524 IEA ATP binding
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000285039 MYO5B-001 protein_coding Homo_sapiens 0 6279
ENST00000324581 MYO5B-006 protein_coding Homo_sapiens 0 1890
ENST00000431872 MYO5BP3-001 processed_pseudogene Homo_sapiens 0 1173
ENST00000449815 MYO5BP2-001 processed_pseudogene Homo_sapiens 0 1219
ENST00000587895 MYO5B-009 processed_transcript Homo_sapiens 0 542
ENST00000589568 MYO5B-010 retained_intron Homo_sapiens 6e-33 145
ENST00000590532 RP11-886H22.1-001 nonsense_mediated_decay Homo_sapiens 0 641
ENST00000592688 MYO5B-002 protein_coding Homo_sapiens 0 1615
ENST00000610994 RP11-4L24.1-001 processed_pseudogene Homo_sapiens 0 1208
ENST00000616031 MYO5B-201 protein_coding Homo_sapiens 0 2180

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