C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB11 family interacting protein 3 (class II)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000122103 Rab11fip3-004 ENSMUSG00000037098 10090 - 17:25989036-26069177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000122103
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000122103 5.862±1.35 3.429±0.66 5.564±0.13 47.763±48.16 4.669±2.38 2.609±0.22 6.060±1.53 1.078±0.73 7.852±0.76 15.053±3.72 4.650±1.74 4.051±2.38 1.960±0.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000910 ISS cytokinesis
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005768 ISS endosome
GO:0005813 ISS centrosome
GO:0005815 IEA microtubule organizing center
GO:0016020 IDA membrane
GO:0017137 ISS Rab GTPase binding
GO:0030306 ISS ADP-ribosylation factor binding
GO:0030496 ISS midbody
GO:0032154 ISS cleavage furrow
GO:0032456 ISS endocytic recycling
GO:0042803 ISS protein homodimerization activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045171 IEA intercellular bridge
GO:0055037 ISS recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262305 RAB11FIP3-001 protein_coding Homo_sapiens 0 1134
ENST00000434585 RAB11FIP3-010 protein_coding Homo_sapiens 0 1919
ENST00000449879 RAB11FIP3-009 protein_coding Homo_sapiens 0 340
ENST00000450428 RAB11FIP3-201 protein_coding Homo_sapiens 0 1134
ENST00000452814 RAB11FIP3-002 protein_coding Homo_sapiens 0 340
ENST00000461009 RAB11FIP3-007 retained_intron Homo_sapiens 0 241
ENST00000464263 RAB11FIP3-006 retained_intron Homo_sapiens 0 255
ENST00000483002 RAB11FIP3-008 retained_intron Homo_sapiens 0 340
ENST00000487899 RAB11FIP3-005 retained_intron Homo_sapiens 0 403
ENST00000610934 RAB11FIP3-202 protein_coding Homo_sapiens 0 1134
ENST00000611004 RAB11FIP3-203 protein_coding Homo_sapiens 0 1134

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