C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase D1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123539 Pld1-004 ENSMUSG00000027695 10090 + 3:27984173-28132050 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000123539
Transcript ID Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000123539 0.239±0.00 0.406±0.13 1.455±0.08 0.344±0.00 0.576±0.16 0.151±0.00 1.369±0.00 0.212±0.00 1.116±0.26 0.727±0.00 0.067±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070U CIL_00070U_0002 CGP 3:27938695-28675858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 ISO endosome
GO:0005794 ISO Golgi apparatus
GO:0006654 ISO phosphatidic acid biosynthetic process
GO:0008654 ISO phospholipid biosynthetic process
GO:0035091 IEA phosphatidylinositol binding
GO:0050830 IMP defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000351298 PLD1-001 protein_coding Homo_sapiens 0 3282
ENST00000356327 PLD1-002 protein_coding Homo_sapiens 0 1688
ENST00000418087 PLD1-010 protein_coding Homo_sapiens 0 496
ENST00000440204 PLD1-011 nonsense_mediated_decay Homo_sapiens 0 425
ENST00000446289 PLD1-003 protein_coding Homo_sapiens 0 741
ENST00000465816 PLD1-014 processed_transcript Homo_sapiens 0 736
ENST00000471075 PLD1-004 retained_intron Homo_sapiens 0 610
ENST00000475273 PLD1-016 processed_transcript Homo_sapiens 0 660
ENST00000481505 PLD1-013 retained_intron Homo_sapiens 0 521
ENST00000498278 PLD1-012 retained_intron Homo_sapiens 0 911

Loading