C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: phospholipase D1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027695 Pld1 10090 + 3:27938695-28133362 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067757 Pld1-002 27984314-28133234 protein_coding
  ENSMUST00000120834 Pld1-001 27938695-28133239 protein_coding
  ENSMUST00000123539 Pld1-004 27984173-28132050 nonsense_mediated_decay
  ENSMUST00000125338 Pld1-007 27950003-28028687 protein_coding
  ENSMUST00000126594 Pld1-009 28109759-28130795 protein_coding
  ENSMUST00000127139 Pld1-005 27950002-27957400 processed_transcript
  ENSMUST00000131842 Pld1-006 28069514-28086686 retained_intron
  ENSMUST00000148827 Pld1-003 28031262-28133362 protein_coding
  ENSMUST00000149017 Pld1-008 28041266-28046797 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067757ENSMUST00000120834ENSMUST00000123539ENSMUST00000131842ENSMUST00000148827
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067757 1.256±0.76 0.153±0.01 4.143±0.05 0.651±0.25 1.233±0.96 2.979±1.24 0.683±0.07 1.076±0.49 0.690±0.32 0.706±0.00 0.306±0.15 1.728±1.58 1.584±0.93 0.216±0.06
ENSMUST00000120834 2.443±1.07 0.170±0.14 1.530±0.55 0.276±0.03 0.821±0.29 3.498±1.85 0.866±0.18 1.109±0.46 1.180±0.47 2.545±1.17 0.230±0.04 1.192±0.47 1.761±0.68 N/A
ENSMUST00000123539 N/A N/A N/A 0.239±0.00 0.406±0.13 1.455±0.08 0.344±0.00 0.576±0.16 0.151±0.00 1.369±0.00 0.212±0.00 1.116±0.26 0.727±0.00 0.067±0.00
ENSMUST00000131842 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.252±0.14
ENSMUST00000148827 0.857±0.00 0.438±0.16 0.908±0.00 0.388±0.00 0.596±0.25 2.675±1.09 0.244±0.00 0.740±0.22 0.623±0.36 1.540±0.17 0.502±0.11 1.498±0.74 0.624±0.00 0.173±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00070U CIL_00070U_0002 CGP 3:27938695-28675858

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005515 IEA protein binding
GO:0005765 IEA lysosomal membrane
GO:0005768 ISO endosome
GO:0005794 ISO Golgi apparatus
GO:0006654 ISO phosphatidic acid biosynthetic process
GO:0008654 ISO phospholipid biosynthetic process
GO:0016020 IEA membrane
GO:0035091 IEA phosphatidylinositol binding
GO:0050830 IMP defense response to Gram-positive bacterium

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000056228 pld1a phospholipase D1a protein_coding Danio_rerio
ENSDARG00000057125 pld1b phospholipase D1b protein_coding Danio_rerio
ENSG00000075651 PLD1 phospholipase D1, phosphatidylcholine-specific protein_coding Homo_sapiens

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