C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuole membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123590 Vmp1-005 ENSMUSG00000018171 10090 - 11:86584930-86602263 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartLiverPlacentaENSMUST00000123590
Transcript ID Brain Heart Liver Placenta
ENSMUST00000123590 8.775±0.00 5.036±0.00 11.850±0.00 29.256±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262291 VMP1-001 protein_coding Homo_sapiens 0 579
ENST00000536180 VMP1-201 protein_coding Homo_sapiens 0 497
ENST00000587470 VMP1-012 retained_intron Homo_sapiens 0 497
ENST00000588617 VMP1-013 processed_transcript Homo_sapiens 0 466
ENST00000591782 VMP1-016 processed_transcript Homo_sapiens 0 496
ENST00000591877 VMP1-014 protein_coding Homo_sapiens 0 381
ENST00000592619 VMP1-015 nonsense_mediated_decay Homo_sapiens 0 525
ENST00000592790 VMP1-004 retained_intron Homo_sapiens 0 372

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