C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuole membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000592790 VMP1-004 ENSG00000062716 9606 + 17:59837931-59842255 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonKidneyLiverLungOvaryENST00000592790
Transcript ID Adrenal Bladder Breast Colon Kidney Liver Lung Ovary
ENST00000592790 14.821±0.00 16.322±0.00 65.388±0.00 24.398±0.00 19.354±7.11 32.766±0.00 26.360±13.39 46.781±21.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081F CIL_00081F_0001 VISTA 17:59485788-60087415
CIL_0008Y2 CIL_0008Y2_0001 VISTA 17:59536739-60138754
CIL_0008VS CIL_0008VS_0001 VISTA 17:59556856-60159441
CIL_000567 CIL_000567_0002 CGP 17:59707192-59892945

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000018315 Vmp1-001 protein_coding Mus_musculus 0 429
ENSMUST00000145846 Vmp1-002 processed_transcript Mus_musculus 0 372
ENSMUST00000123590 Vmp1-005 processed_transcript Mus_musculus 0 372
ENSMUST00000153971 Vmp1-004 processed_transcript Mus_musculus 0 217
ENSMUST00000150176 Vmp1-003 processed_transcript Mus_musculus 0 213

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