C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123619 Col11a1-004 ENSMUSG00000027966 10090 + 3:114030540-114108324 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastKidneyLungOvaryPlacentaTestisENSMUST00000123619
Transcript ID Adipose Adrenal Brain Breast Kidney Lung Ovary Placenta Testis
ENSMUST00000123619 0.233±0.19 0.359±0.16 1.785±0.00 0.275±0.00 0.059±0.03 0.052±0.00 0.876±0.00 0.150±0.00 0.108±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001502 IMP cartilage condensation
GO:0002063 IMP chondrocyte development
GO:0003007 IGI heart morphogenesis
GO:0003674 ND molecular_function
GO:0005581 IDA collagen trimer
GO:0006029 IMP proteoglycan metabolic process
GO:0030199 IGI collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0035989 IGI tendon development
GO:0042472 IMP inner ear morphogenesis
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048705 IMP skeletal system morphogenesis
GO:0051216 IMP cartilage development
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353414 COL11A1-201 protein_coding Homo_sapiens 0 946
ENST00000358392 COL11A1-202 protein_coding Homo_sapiens 0 2008
ENST00000370096 COL11A1-001 protein_coding Homo_sapiens 0 946
ENST00000427239 COL11A1-002 protein_coding Homo_sapiens 0 1905
ENST00000447608 COL11A1-003 protein_coding Homo_sapiens 0 562
ENST00000512756 COL11A1-008 protein_coding Homo_sapiens 0 946

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