C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysophosphatidylcholine acyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000123766 Lpcat1-003 ENSMUSG00000021608 10090 + 13:73467197-73516422 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaENSMUST00000123766
Transcript ID Brain Muscle Ovary Placenta
ENSMUST00000123766 6.673±0.00 0.782±0.16 4.314±0.78 10.845±5.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q6 CIL_0008Q6_0002 VISTA 13:72998274-73600313
CIL_0003AA CIL_0003AA_0002 CGP 13:73331009-73516422

Gene Ontology

GO IDEvidence TypeGO Description
GO:0043129 IDA surfactant homeostasis
GO:0045732 IDA positive regulation of protein catabolic process
GO:0060041 IMP retina development in camera-type eye
GO:2001246 IDA negative regulation of phosphatidylcholine biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000283415 LPCAT1-002 protein_coding Homo_sapiens 0 1203
ENST00000475622 LPCAT1-001 nonsense_mediated_decay Homo_sapiens 0 1203
ENST00000507282 LPCAT1-006 retained_intron Homo_sapiens 0 457
ENST00000513757 LPCAT1-008 retained_intron Homo_sapiens 0 475
ENST00000514484 LPCAT1-004 processed_transcript Homo_sapiens 0 490
ENST00000611696 AYTL2-201 protein_coding Homo_sapiens 0 1203

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