C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 53
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000125943 Tmem53-005 ENSMUSG00000048772 10090 + 4:117252040-117268514 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyOvaryTestisENSMUST00000125943
Transcript ID Adrenal Breast Colon Heart Kidney Ovary Testis
ENSMUST00000125943 34.820±5.27 6.028±1.40 1.633±0.00 4.157±0.91 9.864±2.65 7.122±1.50 15.778±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093U CIL_00093U_0002 VISTA 4:117090982-117692314
CIL_0001PQ CIL_0001PQ_0002 CGP 4:117251951-117497052

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000372235 TMEM53-008 protein_coding Homo_sapiens 1e-26 124
ENST00000372237 TMEM53-001 protein_coding Homo_sapiens 0 723
ENST00000372242 TMEM53-007 protein_coding Homo_sapiens 0 409
ENST00000372243 TMEM53-003 protein_coding Homo_sapiens 6e-27 126
ENST00000372244 TMEM53-005 protein_coding Homo_sapiens 2e-22 111
ENST00000420706 TMEM53-009 protein_coding Homo_sapiens 5e-27 124
ENST00000468117 TMEM53-004 processed_transcript Homo_sapiens 2e-22 111
ENST00000476724 TMEM53-002 processed_transcript Homo_sapiens 2e-22 111
ENST00000495630 TMEM53-006 processed_transcript Homo_sapiens 6e-23 111

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