C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126068 Pax1-002 ENSMUSG00000037034 10090 + 2:147361925-147367878 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLungOvaryTestisENSMUST00000126068
Transcript ID Heart Kidney Lung Ovary Testis
ENSMUST00000126068 0.005±0.00 0.056±0.00 0.021±0.00 0.130±0.05 0.306±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VN CIL_0008VN_0002 VISTA 2:146880290-147481581
CIL_0001U0 CIL_0001U0_0002 CGP 2:147177546-147393295
CIL_0002XI CIL_0002XI_0002 CGP 2:147361925-148046969

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IGI skeletal system development
GO:0001756 IMP somitogenesis
GO:0003677 IEA DNA binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005667 TAS transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007389 IMP pattern specification process
GO:0008283 IMP cell proliferation
GO:0009887 TAS organ morphogenesis
GO:0043367 IMP CD4-positive, alpha-beta T cell differentiation
GO:0043374 IMP CD8-positive, alpha-beta T cell differentiation
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IGI thymus development
GO:0060017 IGI parathyroid gland development
GO:0060349 IMP bone morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000398485 PAX1-001 protein_coding Homo_sapiens 0 1042
ENST00000444366 PAX1-002 protein_coding Homo_sapiens 0 760
ENST00000460221 PAX1-003 processed_transcript Homo_sapiens 0 248
ENST00000613128 PAX1-201 protein_coding Homo_sapiens 0 1042

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