C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beclin 1, autophagy related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126195 Becn1-011 ENSMUSG00000035086 10090 - 11:101291383-101296307 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SB CIL_0005SB_0002 CGP 11:101277968-101296317
CIL_0005S8 CIL_0005S8_0002 CGP 11:101279012-101302286
CIL_0005S9 CIL_0005S9_0002 CGP 11:101285952-101323537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005856 ISS cytoskeleton
GO:0006914 IDA autophagy
GO:0007040 IMP lysosome organization
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 ISS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016239 IGI positive regulation of macroautophagy
GO:0043234 IDA protein complex
GO:0045335 IDA phagocytic vesicle
GO:0048666 IMP neuron development
GO:0050435 IMP beta-amyloid metabolic process
GO:0050790 IMP regulation of catalytic activity
GO:0051707 IDA response to other organism

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361523 BECN1-002 protein_coding Homo_sapiens 0 843
ENST00000438274 BECN1-003 protein_coding Homo_sapiens 0 436
ENST00000543382 BECN1-004 retained_intron Homo_sapiens 0 774
ENST00000586589 BECN1-019 protein_coding Homo_sapiens 0 599
ENST00000589493 BECN1-014 retained_intron Homo_sapiens 0 440
ENST00000589663 BECN1-017 protein_coding Homo_sapiens 0 230
ENST00000590099 BECN1-001 protein_coding Homo_sapiens 0 843
ENST00000591085 BECN1-010 nonsense_mediated_decay Homo_sapiens 0 248
ENST00000593205 BECN1-012 protein_coding Homo_sapiens 5.04467e-44 182
ENST00000617806 BECN1-005 retained_intron Homo_sapiens 0 643

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