C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beclin 1, autophagy related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617806 BECN1-005 ENSG00000126581 9606 - 17:42810134-42824278 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderENST00000617806
Transcript ID Bladder
ENST00000617806 1.001±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SB CIL_0005SB_0001 CGP 17:42795147-42811587
CIL_0005S8 CIL_0005S8_0001 CGP 17:42798792-42833350
CIL_0005S9 CIL_0005S9_0001 CGP 17:42810134-42843758

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000122817 Becn1-003 retained_intron Mus_musculus 0 887
ENSMUST00000139997 Becn1-004 retained_intron Mus_musculus 0 887
ENSMUST00000167667 Becn1-014 nonsense_mediated_decay Mus_musculus 0 811
ENSMUST00000130916 Becn1-001 protein_coding Mus_musculus 0 811
ENSMUST00000041403 Becn1-002 nonsense_mediated_decay Mus_musculus 0 793
ENSMUST00000167818 Becn1-017 nonsense_mediated_decay Mus_musculus 0 652
ENSMUST00000126195 Becn1-011 nonsense_mediated_decay Mus_musculus 0 643
ENSMUST00000140286 Becn1-010 retained_intron Mus_musculus 0 612
ENSMUST00000172233 Becn1-015 protein_coding Mus_musculus 0 604
ENSMUST00000170502 Becn1-013 protein_coding Mus_musculus 0 540
ENSMUST00000139669 Becn1-006 processed_transcript Mus_musculus 0 435
ENSMUST00000136535 Becn1-008 retained_intron Mus_musculus 0 401
ENSMUST00000140706 Becn1-005 protein_coding Mus_musculus 0 396
ENSMUST00000137614 Becn1-009 retained_intron Mus_musculus 0 298
ENSMUST00000164036 Becn1-016 retained_intron Mus_musculus 0 298
ENSMUST00000103107 Cntd1-001 protein_coding Mus_musculus 1e-38 167
ENSMUST00000129863 Becn1-012 protein_coding Mus_musculus 0.00000001 68

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