C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein-kinase, interferon-inducible double stranded RNA dependent inhibitor, repressor of (P58 repressor)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126356 Prkrir-002 ENSMUSG00000030753 10090 + 7:98703103-98715367 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonLungOvaryPlacentaENSMUST00000126356
Transcript ID Adrenal Brain Breast Colon Lung Ovary Placenta
ENSMUST00000126356 17.997±7.33 12.065±0.00 3.243±0.43 4.824±2.32 2.775±0.00 6.161±3.44 9.751±1.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000927 CIL_000927_0002 VISTA 7:98656508-99258633

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005634 IDA nucleus
GO:0008150 ND biological_process
GO:0016301 IEA kinase activity
GO:0016310 IEA phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260045 PRKRIR-001 protein_coding Homo_sapiens 0 460
ENST00000398672 PRKRIRP1-001 processed_pseudogene Homo_sapiens 0 359
ENST00000456373 PRKRIRP3-001 processed_pseudogene Homo_sapiens 0 366
ENST00000489193 PRKRIRP2-001 processed_pseudogene Homo_sapiens 0 411
ENST00000503971 PRKRIRP9-001 processed_pseudogene Homo_sapiens 7e-18 97
ENST00000520248 PRKRIRP7-001 processed_pseudogene Homo_sapiens 0 436
ENST00000525277 PRKRIR-005 retained_intron Homo_sapiens 0 291
ENST00000528993 PRKRIR-003 nonsense_mediated_decay Homo_sapiens 0 1009
ENST00000531878 PRKRIR-004 processed_transcript Homo_sapiens 0 597
ENST00000551685 RP11-73B8.2-001 processed_pseudogene Homo_sapiens 0 364

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