C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/arginine-rich splicing factor 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126641 Srsf10-002 ENSMUSG00000028676 10090 + 4:135855747-135869908 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000126641
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000126641 3.828±1.97 6.803±0.97 9.064±6.10 3.011±0.98 2.751±0.00 2.188±0.13 2.832±0.65 5.629±4.62 4.404±0.44 1.577±0.43 6.541±1.53 5.942±2.57 3.285±1.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000375 IDA RNA splicing, via transesterification reactions
GO:0003723 NAS RNA binding
GO:0005654 IDA nucleoplasm
GO:0006355 NAS regulation of transcription, DNA-templated
GO:0006376 ISS mRNA splice site selection
GO:0006406 NAS mRNA export from nucleus
GO:0016482 IDA cytoplasmic transport
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0051082 NAS unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000338597 SRSF10-008 processed_transcript Homo_sapiens 0 427
ENST00000341154 SRSF10-004 processed_transcript Homo_sapiens 0 1489
ENST00000343255 SRSF10-003 protein_coding Homo_sapiens 0 717
ENST00000344989 SRSF10-002 protein_coding Homo_sapiens 0 1912
ENST00000374452 SRSF10-006 protein_coding Homo_sapiens 0 726
ENST00000374453 SRSF10-014 protein_coding Homo_sapiens 0 691
ENST00000400616 RP5-836E8.1-001 processed_pseudogene Homo_sapiens 0 520
ENST00000427601 RP11-600G3.1-001 processed_pseudogene Homo_sapiens 3e-39 163
ENST00000453840 SRSF10-005 protein_coding Homo_sapiens 0 1783
ENST00000473754 SRSF10-016 processed_transcript Homo_sapiens 0 398
ENST00000473858 SRSF10-015 nonsense_mediated_decay Homo_sapiens 0 966
ENST00000484146 SRSF10-017 protein_coding Homo_sapiens 0 726
ENST00000485292 SRSF10-010 processed_transcript Homo_sapiens 0 294
ENST00000485841 SRSF10-007 retained_intron Homo_sapiens 0 446
ENST00000492112 SRSF10-001 protein_coding Homo_sapiens 0 737
ENST00000495785 SRSF10-012 nonsense_mediated_decay Homo_sapiens 0 350
ENST00000555494 CTD-2325K12.1-001 transcribed_processed_pseudogene Homo_sapiens 0 453
ENST00000600311 CTD-2325K12.1-002 processed_transcript Homo_sapiens 0 453

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