C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 120A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127156 Tmem120a-003 ENSMUSG00000039886 10090 - 5:135736255-135742399 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainOvaryPlacentaENSMUST00000127156
Transcript ID Brain Ovary Placenta
ENSMUST00000127156 3.208±0.00 11.264±4.16 13.599±2.57

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NS CIL_0006NS_0002 CGP 5:135670033-135744271
CIL_0006NR CIL_0006NR_0002 CGP 5:135735485-135778385

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000417509 TMEM120A-003 protein_coding Homo_sapiens 0 588
ENST00000431867 TMEM120A-006 processed_transcript Homo_sapiens 0 588
ENST00000439537 TMEM120A-004 protein_coding Homo_sapiens 0 582
ENST00000440632 TMEM120A-002 nonsense_mediated_decay Homo_sapiens 0 588
ENST00000465494 TMEM120A-010 retained_intron Homo_sapiens 0 473
ENST00000480538 TMEM120A-009 retained_intron Homo_sapiens 0 571
ENST00000480899 TMEM120A-012 protein_coding Homo_sapiens 0 283
ENST00000485200 TMEM120A-005 protein_coding Homo_sapiens 0 257
ENST00000486865 TMEM120A-011 retained_intron Homo_sapiens 0 263
ENST00000490656 TMEM120A-015 nonsense_mediated_decay Homo_sapiens 2e-18 97
ENST00000493111 TMEM120A-001 protein_coding Homo_sapiens 0 582

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