C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 120A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000440632 TMEM120A-002 ENSG00000189077 9606 - 7:75987041-75994656 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartMuscleOvaryPlacentaTestisENST00000440632
Transcript ID Adipose Adrenal Brain Breast Heart Muscle Ovary Placenta Testis
ENST00000440632 14.010±0.00 14.833±0.00 9.200±0.00 16.680±0.00 14.169±0.00 19.417±0.00 64.123±0.00 14.666±0.00 54.688±23.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006NP CIL_0006NP_0001 CGP 7:75842602-75986855
CIL_0006NS CIL_0006NS_0001 CGP 7:75899200-75994659
CIL_0006NR CIL_0006NR_0001 CGP 7:75986837-76048004

Gene Ontology

GO IDEvidence TypeGO Description
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043378 Tmem120a-001 protein_coding Mus_musculus 0 693
ENSMUST00000127156 Tmem120a-003 retained_intron Mus_musculus 0 588
ENSMUST00000111619 Tmem120b-002 protein_coding Mus_musculus 0 248
ENSMUST00000067505 Tmem120b-001 protein_coding Mus_musculus 0 248
ENSMUST00000153399 Tmem120a-002 protein_coding Mus_musculus 0 237
ENSMUST00000161049 Tmem120b-006 retained_intron Mus_musculus 0 231

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