C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vacuole membrane protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127267 Vmp1-006 ENSMUSG00000018171 10090 - 11:86643233-86663573 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyLiverOvaryENSMUST00000127267
Transcript ID Adrenal Heart Kidney Liver Ovary
ENSMUST00000127267 6.931±1.45 6.496±1.54 11.237±0.47 19.329±4.12 9.169±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VS CIL_0008VS_0002 VISTA 11:86270110-86871719
CIL_0008Y2 CIL_0008Y2_0002 VISTA 11:86286196-86887829
CIL_00081F CIL_00081F_0002 VISTA 11:86323484-86925483

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262291 VMP1-001 protein_coding Homo_sapiens 0 503
ENST00000536180 VMP1-201 protein_coding Homo_sapiens 0 503
ENST00000585847 VMP1-009 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000586245 VMP1-011 nonsense_mediated_decay Homo_sapiens 0 457
ENST00000587945 VMP1-008 protein_coding Homo_sapiens 0 503
ENST00000589823 VMP1-017 protein_coding Homo_sapiens 4e-25 119
ENST00000593168 VMP1-010 nonsense_mediated_decay Homo_sapiens 0 224

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