C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 258
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127878 Tmem258-003 ENSMUSG00000036372 10090 + 19:10204218-10207818 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastPlacentaENSMUST00000127878
Transcript ID Adipose Bladder Breast Placenta
ENSMUST00000127878 6.193±0.00 4.415±0.00 7.194±0.00 2.924±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WT CIL_0007WT_0002 VISTA 19:10121785-10724671
CIL_000057 CIL_000057_0002 CGP 19:10204014-10240748

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000257262 TMEM258-005 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000445629 AC104389.32-001 processed_pseudogene Homo_sapiens 6e-34 147
ENST00000535042 TMEM258-008 processed_transcript Homo_sapiens 0 195
ENST00000537328 TMEM258-001 protein_coding Homo_sapiens 0 246
ENST00000541893 TMEM258-006 nonsense_mediated_decay Homo_sapiens 0 250
ENST00000543510 TMEM258-007 protein_coding Homo_sapiens 0 246
ENST00000545210 TMEM258-004 nonsense_mediated_decay Homo_sapiens 0 250

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