C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot protein phosphatase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000540801 SSH2-003 ENSG00000141298 9606 - 17:29630749-29930093 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000540801
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000540801 0.915±0.00 1.480±0.00 1.969±0.00 1.534±0.00 1.040±0.00 1.403±0.00 2.246±0.18 3.325±0.00 2.211±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BZ CIL_0009BZ_0001 VISTA 17:29367684-29969856
CIL_000873 CIL_000873_0001 VISTA 17:29367702-29969870

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0006470 IEA protein dephosphorylation
GO:0008138 IEA protein tyrosine/serine/threonine phosphatase activity
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0 4590
ENSMUST00000181283 Ssh2-002 protein_coding Mus_musculus 0 4440
ENSMUST00000180554 Ssh2-007 retained_intron Mus_musculus 0 1254
ENSMUST00000156488 Ssh2-003 protein_coding Mus_musculus 0 573
ENSMUST00000127890 Ssh2-004 processed_transcript Mus_musculus 0 433
ENSMUST00000077689 Ssh1-003 protein_coding Mus_musculus 0 255
ENSMUST00000159592 Ssh1-001 protein_coding Mus_musculus 0 255
ENSMUST00000112298 Ssh1-002 protein_coding Mus_musculus 0 204
ENSMUST00000180545 Ssh2-006 retained_intron Mus_musculus 8e-35 154

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