C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: slingshot protein phosphatase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000579040 SSH2-004 ENSG00000141298 9606 - 17:29673901-29930173 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BZ CIL_0009BZ_0001 VISTA 17:29367684-29969856
CIL_000873 CIL_000873_0001 VISTA 17:29367702-29969870

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0 989
ENSMUST00000180554 Ssh2-007 retained_intron Mus_musculus 0 640
ENSMUST00000181283 Ssh2-002 protein_coding Mus_musculus 0 619
ENSMUST00000127890 Ssh2-004 processed_transcript Mus_musculus 0 433
ENSMUST00000156488 Ssh2-003 protein_coding Mus_musculus 0 285
ENSMUST00000180545 Ssh2-006 retained_intron Mus_musculus 2e-35 154

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