C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MRV integration site 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000127935 Mrvi1-004 ENSMUSG00000005611 10090 - 7:110868266-110926403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000127935
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000127935 37.021±0.77 1.320±0.33 39.963±8.83 0.506±0.47 1.901±0.44 7.536±0.52 2.297±0.25 1.073±0.30 1.406±1.08 1.994±0.77 0.600±0.27 18.717±7.60 1.433±1.11 0.230±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004IK CIL_0004IK_0002 CGP 7:110850607-110982461
CIL_0004JB CIL_0004JB_0002 CGP 7:110868266-111056377

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0019934 IMP cGMP-mediated signaling
GO:0045986 IMP negative regulation of smooth muscle contraction
GO:0060087 IMP relaxation of vascular smooth muscle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114427 mrvi1-201 protein_coding Danio_rerio 0 217
ENSDART00000154634 mrvi1-001 protein_coding Danio_rerio 0 217
ENST00000423302 MRVI1-001 protein_coding Homo_sapiens 0 1986
ENST00000424001 MRVI1-201 protein_coding Homo_sapiens 0 2001
ENST00000526414 MRVI1-003 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000527509 MRVI1-014 protein_coding Homo_sapiens 0 1975
ENST00000529448 MRVI1-004 nonsense_mediated_decay Homo_sapiens 0 1923
ENST00000529471 MRVI1-012 retained_intron Homo_sapiens 4e-34 148
ENST00000531107 MRVI1-002 protein_coding Homo_sapiens 0 2001
ENST00000534266 MRVI1-005 protein_coding Homo_sapiens 0 1923
ENST00000541483 MRVI1-013 protein_coding Homo_sapiens 0 1437
ENST00000547195 MRVI1-202 protein_coding Homo_sapiens 0 1936
ENST00000558540 MRVI1-015 protein_coding Homo_sapiens 0 2001

Loading