C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD23a homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128035 Rad23a-003 ENSMUSG00000003813 10090 - 8:84835620-84840665 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000128035
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000128035 15.507±2.47 20.593±0.44 17.244±1.67 11.064±0.28 9.631±1.71 16.981±14.65 13.359±0.85 26.537±4.33 11.873±0.00 27.900±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ZV CIL_0007ZV_0002 VISTA 8:84428902-85032705
CIL_0007VV CIL_0007VV_0002 VISTA 8:84441926-85045230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003684 IEA damaged DNA binding
GO:0005634 IEA nucleus
GO:0006289 IEA nucleotide-excision repair
GO:0006974 IGI cellular response to DNA damage stimulus
GO:0043161 IEA proteasome-mediated ubiquitin-dependent protein catabolic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316856 RAD23A-001 protein_coding Homo_sapiens 0 1186
ENST00000586375 RAD23A-010 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000586534 RAD23A-002 protein_coding Homo_sapiens 0 1184
ENST00000588329 RAD23A-006 retained_intron Homo_sapiens 0 832
ENST00000588826 RAD23A-007 processed_transcript Homo_sapiens 0 878
ENST00000590881 RAD23A-008 protein_coding Homo_sapiens 0 364
ENST00000591499 RAD23A-003 nonsense_mediated_decay Homo_sapiens 0 597
ENST00000592268 RAD23A-005 protein_coding Homo_sapiens 0 1051
ENST00000593114 RAD23A-004 nonsense_mediated_decay Homo_sapiens 0 1055

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