C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128113 Trpv1-005 ENSMUSG00000005952 10090 + 11:73252371-73254284 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLiverLungMuscleOvaryTestisENSMUST00000128113
Transcript ID Adrenal Breast Colon Liver Lung Muscle Ovary Testis
ENSMUST00000128113 0.870±0.00 3.047±1.06 0.462±0.25 0.071±0.00 0.279±0.00 0.095±0.00 0.437±0.07 0.042±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031U CIL_00031U_0002 CGP 11:73199460-73261242

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310522 TRPV1-006 protein_coding Homo_sapiens 0 510
ENST00000399756 TRPV1-003 protein_coding Homo_sapiens 0 510
ENST00000399759 TRPV1-002 protein_coding Homo_sapiens 0 510
ENST00000425167 TRPV1-005 protein_coding Homo_sapiens 0 510
ENST00000571088 TRPV1-001 protein_coding Homo_sapiens 0 510
ENST00000572705 TRPV1-002 protein_coding Homo_sapiens 0 510
ENST00000574085 TRPV1-007 retained_intron Homo_sapiens 0 510
ENST00000576351 TRPV1-004 protein_coding Homo_sapiens 0 510

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