C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: topoisomerase (DNA) III beta
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000128407 Top3b-015 ENSMUSG00000022779 10090 + 16:16887839-16892975 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryENSMUST00000128407
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000128407 8.066±0.47 8.106±1.37 10.756±0.85 10.075±1.93 9.102±1.76 3.439±0.66 11.864±1.43 3.626±0.58 8.556±1.04 14.139±1.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008PT CIL_0008PT_0002 VISTA 16:16870677-17470725

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357179 TOP3B-001 protein_coding Homo_sapiens 0 1081
ENST00000398793 TOP3B-003 protein_coding Homo_sapiens 0 1081
ENST00000420768 TOP3BP1-001 processed_pseudogene Homo_sapiens 0 499
ENST00000436282 TOP3B-005 nonsense_mediated_decay Homo_sapiens 0 580
ENST00000444502 TOP3B-002 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000457179 TOP3B-004 nonsense_mediated_decay Homo_sapiens 0 1081
ENST00000457270 TOP3B-006 protein_coding Homo_sapiens 0 580

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